miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|190423576|gb|FG820087.1|FG820087 CAGTCATCAGGTGGGGTTGGGTGCAGGGGTAGACCCTGCGACCAATTCGCCATCTTCAACCTTAAACAAACGTCACATGG
ACCTTTCCATCAACGAGAGAAGCTTCGGCAGAGAAAGAGAAGAGGAAGAGGAAGAAGATAGAGACAACGGCGATGAACCC
AAAGAGGGTGCAGTGGAGGTTGGAACCCGCAGGCCCAGAGGGAGACCACCGGGCTCCAAGAACAAGCCCAAACCACCCAT
CTTTGTCACCAGGGACAGCCCGAACTCCCTCAGAAGCCATGTCATGGAGGTTGCCGGTGGCGCCGACGTCGCCGAAAGCG
TCGCCCAGTTCGCTCGCCGCCGCCAGCGCGGGGTGTGTGTCCTCAGTGGGAGCGGTTCGGTCGCCAACGTCACTCTCCGG
CAACCGGCAGCGCCGGGAGCGGTCGTGGCACTGCATGGAAGGTTTGAGATTCTATCCCTGACCGGAGCGTTTCTGCCTGG
CCCTGCTCCGCCAGGTGCCACCGGACTCACTGTGTATCTGGCCGGAGGACAGGGCCAGGTTGTAGGAGGGAGCGTTGTTG
GTCCTCTCGTGGCGGCTGGACCAGTGATGATCATAGCAGCCACTTTTGCTAATGCTACATATGAGAGGTTGCCGCTTGAA
GAGGAGGAGGAAGACGGTGGCGGTGGCAGTGTCCAGGGCGGAAGTACTCTGGGAGGGTCTCCTCCTGGAATTGGTAGCAG
TGGCGGTGGTGGCGGCGGCGACGGTGTGAGTGGTGGGAGCCACTTGCCCGGTGGGATTCCCGATCCTTCTTCTTTGCCTT
TGTATAACCTGCCCACAAATCTT




Most similar to sp|Q9S7C9|ESCA_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA
           OS=Arabidopsis thaliana GN=ESC PE=2 SV=1
          Length = 311

 Score =  102 bits (253), Expect = 4e-21
 Identities = 53/82 (64%), Positives = 62/82 (75%), Gaps = 9/82 (10%)
 Frame = +2

Query: 239 IFVTRDSPNSLRSHVMEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAP- 415
           I VTRDSPN+LRSHV+EV+ GAD+ ESV+ +ARRR RGV VL G+G+V+NVTLRQP  P 
Sbjct: 103 IIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPG 162

Query: 416 --------GAVVALHGRFEILS 457
                   G VV LHGRFEILS
Sbjct: 163 NGGGVSGGGGVVTLHGRFEILS 184